STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaIAcyl-coenzyme A thioesterase PaaI. (136 aa)    
Predicted Functional Partners:
paaK_1
Phenylacetate-coenzyme A ligase.
 
 
 0.955
paaK_2
Phenylacetate-coenzyme A ligase.
 
 
 0.955
mepA_6
Multidrug export protein mepA.
       0.776
SCI69251.1
Domain of uncharacterised function (DUF2027).
       0.727
ribD
Riboflavin biosynthesis protein RibD.
    
 0.664
menB
1%2C4-Dihydroxy-2-naphthoyl-CoA synthase.
    
 0.583
menA
1%2C4-dihydroxy-2-naphthoate octaprenyltransferase.
    
 0.562
queA_2
S-adenosylmethionine:tRNA ribosyltransferase-isomerase.
       0.493
ribH
6%2C7-dimethyl-8-ribityllumazine synthase.
    
  0.463
punA
Purine nucleoside phosphorylase 1.
    
  0.441
Your Current Organism:
uncultured Bacteroides sp.
NCBI taxonomy Id: 162156
Other names: u. Bacteroides sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.