STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYL31775.1Polyribonucleotide nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (708 aa)    
Predicted Functional Partners:
KYL31537.1
Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.987
fusA
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.968
KYL32174.1
50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.955
eno
DNA mismatch repair protein MutH; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.953
KYL32581.1
50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.949
KYL35541.1
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.920
rpsN
30S ribosomal protein S14; Located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.912
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.911
KYL31779.1
Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.910
KYL35640.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.907
Your Current Organism:
Pseudoalteromonas telluritireducens
NCBI taxonomy Id: 162160
Other names: DSM 16098, P. telluritireducens, Pseudoalteromonas sp. Se-1-2-red, Pseudoalteromonas sp. Te-1-1, VKM B-2382, strain Se-1-2-red
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.