STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM39823.1Cytochrome c-type biogenesis protein CcsA. (271 aa)    
Predicted Functional Partners:
AMM41199.1
Cytochrome C biogenesis protein ResB.
 
  
 0.931
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.887
AMM41759.1
uroporphyrinogen-III C-methyltransferase.
  
 
  0.887
AMM39821.1
Siroheme synthase.
    
  0.811
AMM39822.1
Pyridoxal phosphate-dependent aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.773
AMM39820.1
XRE family transcriptional regulator.
       0.501
AMM40835.1
Pilus assembly protein.
  
  
 0.455
AMM42250.1
ABC transporter ATP-binding protein.
    
  0.419
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.