STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM39875.1Hypothetical protein. (188 aa)    
Predicted Functional Partners:
AMM39871.1
Type II secretory protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
       0.773
AMM39872.1
General secretion pathway protein F.
       0.773
AMM39873.1
General secretion pathway protein H.
       0.773
AMM39874.1
Hypothetical protein.
       0.773
AMM39876.1
General secretion pathway protein K.
       0.773
pilN
Type IV pilus assembly protein PilN.
       0.773
AMM39878.1
Hypothetical protein.
       0.773
AMM39879.1
Type II secretion system gspD.
       0.773
AMM39870.1
GYD family protein.
       0.495
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.