STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM39905.1RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (400 aa)    
Predicted Functional Partners:
AMM39902.1
ABC transporter ATP-binding protein/permease.
 
 0.976
AMM39906.1
Transporter.
 
 0.976
AMM39903.1
Multidrug ABC transporter substrate-binding protein.
 
 0.974
AMM39904.1
Macrolide ABC transporter ATP-binding protein.
 0.958
AMM42168.1
Multidrug ABC transporter substrate-binding protein.
 
 0.902
AMM40994.1
Outer membrane efflux protein.
 
 0.890
AMM42171.1
Membrane protein containing DUF214, permase predicted.
 
 
 0.889
AMM42169.1
ABC transporter ATP-binding protein/permease.
 
 
 0.884
AMM42170.1
Multidrug ABC transporter substrate-binding protein.
 
 
 0.874
AMM40993.1
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
0.755
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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