STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM39921.1Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family. (279 aa)    
Predicted Functional Partners:
AMM39923.1
Conserved hypothetical protein, membrane.
 
     0.813
AMM39922.1
ADP-heptose:LPS heptosyltransferase.
  
    0.775
AMM39919.1
UDP-galactopyranose mutase.
 
     0.735
AMM39920.1
Family 2 glycosyl transferase.
 
     0.727
AMM40977.1
FAD-binding protein.
    
 0.709
atpD
F0F1 ATP synthase, F1 complex, subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
  0.706
AMM40511.1
Methyltransferase type 11 domain protein.
  
 0.703
AMM42109.1
Carboxylyase-related protein; Belongs to the UbiD family.
    
 0.659
AMM42036.1
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.656
AMM41006.1
UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
    
 0.606
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.