STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM39945.1Radical SAM protein. (358 aa)    
Predicted Functional Partners:
AMM39946.1
ParB domain-containing protein nuclease.
     
 0.795
AMM39947.1
Hydrolase HAD family.
       0.773
AMM39948.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.773
AMM40936.1
Glycosyltransferase-like protein, family 2.
 
     0.722
AMM39949.1
Collagenase-like protease.
       0.615
AMM39950.1
Creatinine amidohydrolase.
       0.615
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.615
AMM42085.1
Phosphoesterase RecJ domain-containing protein.
  
     0.535
AMM41088.1
Hypothetical protein.
  
     0.459
AMM41753.1
GTP-binding protein.
  
     0.440
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.