STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40109.1Ferredoxin. (139 aa)    
Predicted Functional Partners:
AMM40108.1
Protein containing DUF39.
 
  
  0.974
qrcB
Molybdopterin oxidoreductase, quinone reductase complex, subunit B; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.970
qrcA
Cytochrome C, quinone reductase complex, subunit A.
  
 0.909
AMM41538.1
Cytochrome C7.
  
 0.889
qrcD
Quinone reductase complex, subunit D.
  
 0.840
hmeB
Hdr-like menaquinol oxidoreductase complex, subunit B.
  
 0.840
AMM42189.1
ApbE family lipoprotein.
 
     0.778
thi4
Thiazole biosynthesis enzyme; Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur.
 
     0.753
rnfB
Electron transport complex, RnfABCDGE type, subunit B; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.693
AMM39836.1
4Fe-4S ferredoxin.
    
 0.691
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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