STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40354.1Cytochrome C family protein. (370 aa)    
Predicted Functional Partners:
AMM40355.1
40-residue YVTN family beta-propeller.
       0.741
AMM41280.1
Competence damage-inducible protein A; Belongs to the CinA family.
  
 
  0.701
AMM40356.1
Hypothetical protein.
       0.677
AMM40357.1
Lipoprotein.
       0.663
AMM40358.1
Cell envelope biogenesis protein OmpA.
       0.663
AMM40359.1
Lipoprotein.
       0.663
AMM40351.1
Cytochrome C, doubled CXXCH domain-containing protein, secreted.
       0.658
AMM40352.1
DNA polymerase subunit beta.
       0.658
AMM40353.1
Protein containing DUF86.
       0.658
AMM40360.1
Secreted protein containing Peptidyl-prolyl cis-trans isomerase, PpiC-type domain protein.
       0.636
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.