STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40364.1NHL repeat containing protein. (368 aa)    
Predicted Functional Partners:
AMM40362.1
Cytochrome C family protein.
 
     0.934
AMM40361.1
Cytochrome C family protein.
 
     0.924
AMM40357.1
Lipoprotein.
 
     0.918
AMM40363.1
Cell surface protein.
 
   
0.827
AMM40510.1
Glycosyl transferase.
    
 0.773
AMM40360.1
Secreted protein containing Peptidyl-prolyl cis-trans isomerase, PpiC-type domain protein.
 
     0.725
AMM41436.1
Oxidoreductase.
  
 
 0.725
AMM40358.1
Cell envelope biogenesis protein OmpA.
       0.669
AMM40356.1
Hypothetical protein.
       0.662
AMM40359.1
Lipoprotein.
       0.661
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.