STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40405.1Transcriptional regulator. (64 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus secretin PilQ.
     
 0.636
pilM
Type IV pilus assembly protein PilM.
       0.623
pilN-2
Type IV pilus assembly protein PilN.
       0.623
pilO
Type IV pilus assembly protein PilO.
       0.623
pilP
Type IV pilus assembly protein PilP.
       0.623
AMM40411.1
Phosphoribosylglycinamide formyltransferase.
       0.623
AMM41750.1
Protein containing Glutamate synthase, alpha subunit.
    
  0.616
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
     
 0.560
AMM41070.1
ATP-citrate synthase, alpha subunit.
     
 0.537
AMM41067.1
Aconitate hydratase.
     
 0.536
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.