STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40616.1Peptidase M48 Ste24p. (486 aa)    
Predicted Functional Partners:
AMM40617.1
RimK domain-containing protein ATP-grasp.
 
     0.806
AMM40613.1
Hypothetical protein.
       0.773
AMM40614.1
Hypothetical protein.
       0.773
AMM40615.1
Spore coat protein.
       0.773
ribBA
Riboflavin biosynthesis protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.688
AMM40579.1
Metal-dependent phosphohydrolase, HD region, subdomain protein.
   
 0.642
AMM40234.1
Methyl-accepting chemotaxis protein.
    
  0.624
AMM40799.1
Multi-sensor hybrid histidine kinase.
    
 0.617
AMM40599.1
Coiled-coil protein.
   
   0.555
AMM40612.1
Membrane protein.
       0.489
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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