STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40659.1Biotin--protein ligase. (483 aa)    
Predicted Functional Partners:
AMM39931.1
Class III cytochrome C family protein.
  
     0.723
AMM40512.1
CgeB family protein.
  
     0.686
AMM40235.1
Cytochrome C.
  
     0.681
AMM40514.1
CgeB family protein.
  
     0.642
qrcD
Quinone reductase complex, subunit D.
  
     0.621
tmcA
Class III cytochrome C, putative tetraheme type II cytochrome c3 complex, subunit A.
  
     0.586
AMM41915.1
Integrin-like repeat-containing protein.
  
     0.578
AMM42051.1
Class III cytochrome C.
  
     0.522
AMM40629.1
Hypothetical protein.
  
     0.517
AMM41262.1
tRNA(1-methyladenosine) methyltransferase-like methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
  
     0.505
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.