STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40667.1TraG family protein. (816 aa)    
Predicted Functional Partners:
AMM40798.1
Hypothetical protein.
   
 
 0.860
AMM40806.1
type-IV secretion system protein TraC.
 
  
 0.791
AMM40804.1
Conjugal transfer protein TraB.
 
     0.745
AMM40836.1
Conjugal transfer protein TraH.
 
   
 0.710
AMM40810.1
Conjugal transfer protein TraU.
 
     0.701
AMM40835.1
Pilus assembly protein.
 
     0.684
AMM40814.1
Conjugal transfer protein TraN.
  
    0.668
AMM40838.1
Membrane protein containing TraG-like protein.
 
     0.666
AMM40763.1
DEAD/DEAH box helicase.
  
     0.564
AMM40666.1
DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.533
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
Server load: low (24%) [HD]