STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40678.1Protein containing DUF86. (120 aa)    
Predicted Functional Partners:
AMM40677.1
DNA polymerase.
 
 
  0.944
AMM42156.1
Nucleotidyltransferase.
 
 
  0.850
AMM40372.1
Nucleotidyltransferase.
 
 
  0.833
AMM42022.1
Nucleotidyltransferase domain protein.
 
 
  0.800
AMM40676.1
Restriction modification system DNA specificity subunit.
       0.778
AMM40680.1
Metal-dependent hydrolase.
       0.778
AMM40675.1
Type I restriction-modification system, M subunit.
       0.774
AMM40679.1
Restriction endonuclease subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.773
AMM42157.1
Hypothetical protein.
  
  
 
0.664
AMM40044.1
DNA polymerase III subunit beta.
  
 
  0.629
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.