STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40761.1SAM-dependent methlyltransferase. (352 aa)    
Predicted Functional Partners:
AMM40763.1
DEAD/DEAH box helicase.
     0.970
AMM40762.1
Hypothetical protein.
       0.631
AMM40760.1
Hypothetical protein.
       0.603
AMM40806.1
type-IV secretion system protein TraC.
  
     0.585
AMM40667.1
TraG family protein.
  
     0.497
AMM40759.1
Phage/plasmid primase, P4 family.
       0.487
AMM40804.1
Conjugal transfer protein TraB.
  
     0.480
AMM40766.1
Chromosome segregation protein SMC.
 
     0.477
AMM40836.1
Conjugal transfer protein TraH.
  
     0.426
AMM40764.1
Hypothetical protein.
       0.414
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.