STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40836.1Conjugal transfer protein TraH. (481 aa)    
Predicted Functional Partners:
AMM40838.1
Membrane protein containing TraG-like protein.
 
   
 0.946
AMM40835.1
Pilus assembly protein.
 
     0.921
AMM40810.1
Conjugal transfer protein TraU.
 
   
 0.815
AMM40804.1
Conjugal transfer protein TraB.
 
     0.794
AMM40806.1
type-IV secretion system protein TraC.
 
     0.794
AMM40814.1
Conjugal transfer protein TraN.
 
     0.790
AMM40837.1
Hypothetical protein.
       0.741
AMM40839.1
Hypothetical protein.
       0.741
AMM40840.1
Hypothetical protein.
       0.741
AMM40667.1
TraG family protein.
 
   
 0.710
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.