STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40870.1CRISPR-associated RAMP Cmr1 family protein. (256 aa)    
Predicted Functional Partners:
AMM40869.1
Hypothetical protein.
   
 
 0.886
AMM40867.1
Cmr4 family CRISPR-associated RAMP protein.
   
 
 0.878
AMM40868.1
CRISPR-associated protein, family.
       0.791
AMM40865.1
Hypothetical protein.
       0.776
AMM40866.1
Hypothetical protein.
       0.757
AMM40871.1
Hypothetical protein.
       0.517
AMM40916.1
CRISPR-associated protein, Csm1 family.
   
 
 0.513
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.