STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM40897.1Hypothetical protein. (107 aa)    
Predicted Functional Partners:
AMM40896.1
Hypothetical protein.
       0.791
pilT-4
Twitching motility protein PilT; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.594
AMM40379.1
Uncharacterized protein family UPF0150 domain protein.
  
     0.528
pilT-9
Twitching motility protein PilT.
  
     0.528
AMM42104.1
Protein containing DUF433.
  
     0.510
pilT
Twitching motility protein PilT.
  
     0.459
AMM42308.1
Hypothetical protein.
  
     0.451
AMM41503.1
Hypothetical protein.
  
     0.439
AMM40895.1
Protein containing DUF433.
  
     0.433
vapC
Protein containing PilT protein domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.421
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.