STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM41408.1Cation:proton antiporter. (81 aa)    
Predicted Functional Partners:
mnhF
pH regulation protein F.
 
 
   0.976
mnhE
Cation antiporter.
 
 
 0.975
mnhG
Na+/H+ antiporter subunit.
 
 
 0.974
mnhC
NADH-ubiquinone oxidoreductase subunit 4L.
 
 0.955
mnhD-3
Monovalent cation/H+ antiporter subunit D.
 
 0.923
mnhD
Monovalent cation/H+ antiporter subunit D.
 
 0.916
mnhD-2
Monovalent cation/H+ antiporter subunit D.
 
 0.915
rnfB
Electron transport complex, RnfABCDGE type, subunit B; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
   
   0.839
AMM41413.1
Positive regulator of sigma(E), RseC/MucC.
 
     0.745
AMM41412.1
Thiamine biosynthesis protein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
       0.723
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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