STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM41444.1DtxR family iron (metal) dependent repressor. (232 aa)    
Predicted Functional Partners:
AMM41315.1
ATP-binding protein.
    
   0.862
AMM39962.1
Cobalt transporter CbiM.
     
 0.787
AMM39960.1
Cobalt ABC transporter CbiQ, permease subunit.
     
 0.785
AMM40101.1
Peptide ABC transporter substrate-binding protein.
   
 
  0.767
AMM40080.1
Permease YjgP/YjgQ family protein.
 
  
  0.716
AMM40081.1
Putative permease YjgP/YjgQ.
    
  0.654
AMM42309.1
Organic solvent ABC transporter ATP-binding protein.
  
  
  0.646
AMM40745.1
Metal-dependent phosphohydrolase, HD region, subdomain protein domain protein.
    
  0.620
AMM40131.1
Pyridine nucleotide-disulfide oxidoreductase.
   
 
  0.592
fur
Fur family transcriptional regulator; Belongs to the Fur family.
  
  
 0.561
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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