STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM41548.1Endonuclease/exonuclease/phosphatase family protein. (251 aa)    
Predicted Functional Partners:
AMM39808.1
Hypothetical protein.
  
     0.653
AMM41760.1
Trehalose-phosphatase.
  
    0.607
AMM41973.1
Peptidase S8/S53.
  
 
  0.564
AMM40371.1
4-alpha-glucanotransferase.
    
 0.553
AMM41549.1
ABC transporter ATP-binding protein.
       0.537
AMM41550.1
SufBD protein.
       0.537
selA
Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
  
    0.497
AMM41552.1
Hypothetical protein.
       0.494
AMM41607.1
Glycogen debranching protein; Belongs to the glycosyl hydrolase 13 family.
    
 0.494
AMM41547.1
Hypothetical protein.
       0.439
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.