STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selASelenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (467 aa)    
Predicted Functional Partners:
selD
Segregation protein B; Synthesizes selenophosphate from selenide and ATP.
 
  
 0.930
AMM41619.1
Selenocysteine-specific translation elongation factor.
  
 0.880
AMM41552.1
Hypothetical protein.
       0.773
AMM41550.1
SufBD protein.
  
    0.708
AMM41549.1
ABC transporter ATP-binding protein.
       0.705
serS
seryl-tRNA synthase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.689
AMM41107.1
Phosphotransferase system, phosphocarrier HPr protein domain protein.
     
 0.602
AMM39955.1
Hydrogenase expression/formation protein HypE.
     
 0.572
AMM41937.1
Transporter.
 
  
 0.512
AMM41548.1
Endonuclease/exonuclease/phosphatase family protein.
  
    0.497
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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