STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM41614.1Hypothetical protein. (189 aa)    
Predicted Functional Partners:
AMM41613.1
Nitrogen regulation protein NtrY.
 
     0.833
AMM41612.1
Sigma-54 interaction domain protein.
       0.757
AMM40017.1
Hypothetical protein.
  
     0.716
AMM41474.1
Protein containing ATP synthase I chain.
  
     0.712
AMM41088.1
Hypothetical protein.
  
     0.639
AMM40629.1
Hypothetical protein.
  
     0.603
cysS
cysteinyl-tRNA synthetase.
  
     0.598
AMM41615.1
Hypothetical protein.
       0.543
AMM41423.1
DNA internalization-related competence protein ComEC/Rec2.
  
     0.529
AMM41915.1
Integrin-like repeat-containing protein.
  
     0.521
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.