STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM41795.1Multidrug ABC transporter ATPase. (243 aa)    
Predicted Functional Partners:
AMM40990.1
Multidrug ABC transporter ATP-binding protein.
 
 
 0.977
AMM40991.1
Inner membrane transport permease YhhJ.
 
 
 0.965
AMM40644.1
ABC transporter permease.
 0.964
AMM41794.1
ABC transporter permease.
 
    0.925
AMM41793.1
Hypothetical protein.
 
   
 0.896
msbA
Lipid A export ATP-binding/permease protein msbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
0.769
AMM39959.1
Cobalt ABC transporter ATPase.
 
 
 
0.762
atpD
F0F1 ATP synthase, F1 complex, subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.755
AMM41994.1
Hypothetical protein.
  
 0.739
atpA
F0F1 ATP synthase, F1 complex, subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.737
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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