STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM41816.1Isoprenylcysteine carboxyl methyltransferase. (194 aa)    
Predicted Functional Partners:
AMM41817.1
Histidine kinase.
 
     0.805
AMM40682.1
Leucine rich repeat protein.
    
 0.804
AMM41815.1
NAD-dependent epimerase/dehydratase.
  
    0.775
AMM41814.1
3-oxoacyl-ACP synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
       0.773
AMM41812.1
Hypothetical protein.
       0.668
AMM41813.1
Membrane protein involved in aromatic hydrocarbon degradation.
       0.668
AMM41818.1
Fis family transcriptional regulator.
       0.658
AMM41819.1
Acetoacetate metabolism regulatory protein AtoC.
       0.658
cysS
cysteinyl-tRNA synthetase.
   
 
  0.611
AMM40928.1
Nitroreductase.
   
 
  0.590
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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