STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM41915.1Integrin-like repeat-containing protein. (324 aa)    
Predicted Functional Partners:
qrcD
Quinone reductase complex, subunit D.
  
     0.717
AMM40003.1
Hypothetical protein.
  
     0.683
AMM41658.1
PAS domain S-box protein.
  
 
 0.633
AMM40579.1
Metal-dependent phosphohydrolase, HD region, subdomain protein.
  
 
  0.619
tmcA
Class III cytochrome C, putative tetraheme type II cytochrome c3 complex, subunit A.
  
     0.607
AMM39931.1
Class III cytochrome C family protein.
  
     0.585
AMM40659.1
Biotin--protein ligase.
  
     0.578
tmcC
Tetraheme type II cytochrome c3 complex, subunit C.
  
     0.566
tmcD
Tetraheme type II cytochrome c3 complex, subunit D.
  
     0.552
AMM42051.1
Class III cytochrome C.
  
     0.529
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.