STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM42085.1Phosphoesterase RecJ domain-containing protein. (330 aa)    
Predicted Functional Partners:
AMM42084.1
Hypothetical protein.
       0.773
AMM41088.1
Hypothetical protein.
  
     0.702
AMM41245.1
Nucleoside recognition protein.
  
     0.599
AMM42091.1
Beta-lactamase-like domain protein.
     
 0.578
AMM41091.1
Metal dependent phosphohydrolase.
  
     0.553
AMM39945.1
Radical SAM protein.
  
     0.535
lon-3
Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
  
    0.518
AMM42086.1
Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.
       0.508
AMM42088.1
Metal-dependent phosphoesterases (PHP family).
       0.508
AMM42089.1
Rubrerythrin.
       0.508
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.