STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM42126.1Conserved hypothetical protein, secreted. (562 aa)    
Predicted Functional Partners:
ribBA
Riboflavin biosynthesis protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.912
AMM42281.1
Tetratricopeptide repeat protein.
 
0.911
AMM40525.1
Conserved hypothetical protein, secreted.
 
0.909
AMM41145.1
Hypothetical protein.
 
 0.897
AMM41343.1
Hypothetical protein.
 
 0.883
AMM41583.1
Membrane protein containing ATP-binding region, ATPase-like protein.
 
 
 0.881
AMM41398.1
Bacterial regulatory protein, MarR.
 
0.878
AMM41679.1
TPR domain-containing protein.
 
 
0.876
AMM40931.1
Hypothetical protein.
 
0.873
AMM41277.1
Multi-sensor hybrid histidine kinase.
 
 
 0.857
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.