STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM42131.1Conserved hypothetical protein, membrane. (713 aa)    
Predicted Functional Partners:
AMM42130.1
Glycosyl transferase family protein.
 
     0.826
AMM42129.1
Peptidase M20.
  
   0.785
AMM42128.1
30S ribosomal protein S19.
       0.773
AMM40511.1
Methyltransferase type 11 domain protein.
  
 
 0.626
AMM41760.1
Trehalose-phosphatase.
   
 
 0.611
AMM42126.1
Conserved hypothetical protein, secreted.
       0.563
AMM42127.1
RNA polymerase, sigma 32 (sigma H) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.553
AMM42125.1
Hypothetical protein.
       0.545
AMM40580.1
Conserved hypothetical protein, secreted.
  
     0.475
AMM40425.1
Conserved hypothetical protein, secreted.
  
     0.436
Your Current Organism:
Desulfofervidus auxilii
NCBI taxonomy Id: 1621989
Other names: C. Desulfofervidus auxilii, Candidatus Desulfofervidus auxilii, delta proteobacterium HotSeep1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.