Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMM40138.1 | AMM42290.1 | HS1_000332 | HS1_002508 | Methyltransferase. | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.670 |
| AMM40138.1 | rnpA | HS1_000332 | HS1_002507 | Methyltransferase. | Riibonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.431 |
| AMM42287.1 | AMM42290.1 | HS1_002505 | HS1_002508 | Hypothetical protein. | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.773 |
| AMM42287.1 | AMM42292.1 | HS1_002505 | HS1_002510 | Hypothetical protein. | Single-stranded nucleic acid binding R3H domain-containing protein. | 0.690 |
| AMM42287.1 | rnpA | HS1_002505 | HS1_002507 | Hypothetical protein. | Riibonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.773 |
| AMM42287.1 | rpmH | HS1_002505 | HS1_002506 | Hypothetical protein. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.773 |
| AMM42287.1 | yidC | HS1_002505 | HS1_002509 | Hypothetical protein. | Membrane insertion protein, OxaA/YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.709 |
| AMM42290.1 | AMM40138.1 | HS1_002508 | HS1_000332 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Methyltransferase. | 0.670 |
| AMM42290.1 | AMM42287.1 | HS1_002508 | HS1_002505 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Hypothetical protein. | 0.773 |
| AMM42290.1 | AMM42292.1 | HS1_002508 | HS1_002510 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Single-stranded nucleic acid binding R3H domain-containing protein. | 0.870 |
| AMM42290.1 | metG | HS1_002508 | HS1_002231 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.633 |
| AMM42290.1 | rho | HS1_002508 | HS1_000659 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.682 |
| AMM42290.1 | rnpA | HS1_002508 | HS1_002507 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Riibonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.985 |
| AMM42290.1 | rpmH | HS1_002508 | HS1_002506 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.843 |
| AMM42290.1 | secE | HS1_002508 | HS1_000494 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.832 |
| AMM42290.1 | serS | HS1_002508 | HS1_001849 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | seryl-tRNA synthase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.690 |
| AMM42290.1 | yidC | HS1_002508 | HS1_002509 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Membrane insertion protein, OxaA/YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.926 |
| AMM42292.1 | AMM42287.1 | HS1_002510 | HS1_002505 | Single-stranded nucleic acid binding R3H domain-containing protein. | Hypothetical protein. | 0.690 |
| AMM42292.1 | AMM42290.1 | HS1_002510 | HS1_002508 | Single-stranded nucleic acid binding R3H domain-containing protein. | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.870 |
| AMM42292.1 | rho | HS1_002510 | HS1_000659 | Single-stranded nucleic acid binding R3H domain-containing protein. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.571 |
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