STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001953785_00981Unannotated protein. (164 aa)    
Predicted Functional Partners:
GCA_001953785_00980
Unannotated protein.
     0.994
CPQ89_07225
Unannotated protein; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.883
araD
Unannotated protein.
  
 
 0.864
GCA_001953785_00924
Unannotated protein.
  
 
 0.864
CPQ89_06840
Unannotated protein; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
    
 0.855
CPQ89_09475
Unannotated protein.
    
 0.845
CPQ89_01410
Unannotated protein.
  
 
 0.826
GCA_001953785_00979
Unannotated protein.
 
     0.809
rpiA
Unannotated protein; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
    
 0.636
CPQ89_05010
Unannotated protein.
    
 
 0.593
Your Current Organism:
Lactobacillus murinus
NCBI taxonomy Id: 1622
Other names: ATCC 35020, CCUG 33904, CIP 104818, CNRZ 220, DSM 20452, IFO 14221, L. murinus, LMG 14189, LMG:14189, NBRC 14221, strain 313
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.