STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPQ89_03955Unannotated protein. (176 aa)    
Predicted Functional Partners:
CPQ89_03950
Unannotated protein.
  
    0.783
CPQ89_06490
Unannotated protein.
  
 
 0.719
CPQ89_06670
Unannotated protein.
  
 
 0.719
CPQ89_06350
Unannotated protein.
  
  
 0.618
GCA_001953785_01483
Unannotated protein.
 
    0.603
CPQ89_03945
Unannotated protein.
  
    0.590
GCA_001953785_01456
Unannotated protein.
       0.578
CPQ89_03960
Unannotated protein; Belongs to the TPP enzyme family.
 
     0.554
CPQ89_06745
Unannotated protein; Belongs to the UPF0358 family.
  
     0.545
rpoD
Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
     
 0.534
Your Current Organism:
Lactobacillus murinus
NCBI taxonomy Id: 1622
Other names: ATCC 35020, CCUG 33904, CIP 104818, CNRZ 220, DSM 20452, IFO 14221, L. murinus, LMG 14189, LMG:14189, NBRC 14221, strain 313
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.