STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001243045_01937Unannotated protein. (472 aa)    
Predicted Functional Partners:
GCA_001243045_01936
Unannotated protein.
 
 0.991
GCA_001243045_01935
Unannotated protein.
 
    0.979
GCA_001243045_00405
Unannotated protein.
 
 0.956
GCA_001243045_02338
Unannotated protein.
   
 
  0.880
GCA_001243045_01042
Unannotated protein.
  
 
 0.878
GCA_001243045_02144
Unannotated protein.
    
 0.868
GCA_001243045_02330
Unannotated protein.
    
 0.868
GCA_001243045_00126
Unannotated protein.
    
  0.837
GCA_001243045_00430
Unannotated protein.
  
 
 0.805
GCA_001243045_00033
Unannotated protein.
 
    0.800
Your Current Organism:
Clostridium niameyense
NCBI taxonomy Id: 1622073
Other names: C. niameyense, CSUR P1468, Clostridium sp. MT5, DSM 100441, strain MT5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.