STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALS21378.1YlmC/YmxH family sporulation protein. (99 aa)    
Predicted Functional Partners:
ALS21377.1
Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.933
ALS21375.1
Peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR.
 
   
 0.913
ALS21376.1
DNA-directed RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.870
ALS21242.1
Stage V sporulation protein AC.
  
    0.799
ALS24543.1
Stage II sporulation protein R.
 
     0.785
ALS22690.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
     0.777
ALS22779.1
SpoIVB peptidase.
  
     0.769
ALS21379.1
Multicopper polyphenol oxidase; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.767
ALS20502.1
Membrane protein.
  
     0.765
ALS21243.1
SpoVAD.
  
    0.765
Your Current Organism:
Paenibacillus naphthalenovorans
NCBI taxonomy Id: 162209
Other names: ATCC BAA-206, DSM 14203, P. naphthalenovorans, Paenibacillus naphthalenovorans Daane et al. 2002, Paenibacillus sp. PR-N1, Paenibacillus sp. PR-N16, Paenibacillus sp. PR-N5, Paenibacillus sp. PS-N1, Paenibacillus sp. PS-N6, Paenibacillus sp. SA-N1, strain PR-N1
Server load: low (30%) [HD]