STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALS21407.1GerA spore germination protein. (519 aa)    
Predicted Functional Partners:
ALS21406.1
Germination protein GerC.
 
  
 0.944
ALS21404.1
Spore gernimation protein.
 
  
 0.936
ALS21243.1
SpoVAD.
  
  
 0.791
ALS25083.1
Spore gernimation protein GerC.
 
  
 0.791
ALS22386.1
Germination protein GerC.
 
  
 0.790
ALS21242.1
Stage V sporulation protein AC.
  
  
 0.786
ALS25293.1
Germination protein GerC.
 
  
 0.784
ALS21244.1
Stage V sporulation protein AEB.
  
  
 0.777
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.773
ALS22779.1
SpoIVB peptidase.
  
     0.771
Your Current Organism:
Paenibacillus naphthalenovorans
NCBI taxonomy Id: 162209
Other names: ATCC BAA-206, DSM 14203, P. naphthalenovorans, Paenibacillus naphthalenovorans Daane et al. 2002, Paenibacillus sp. PR-N1, Paenibacillus sp. PR-N16, Paenibacillus sp. PR-N5, Paenibacillus sp. PS-N1, Paenibacillus sp. PS-N6, Paenibacillus sp. SA-N1, strain PR-N1
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