STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALS22826.1LuxR family transcriptional regulator. (150 aa)    
Predicted Functional Partners:
ALS23907.1
Histidine kinase.
  
 
 0.587
ALS25141.1
Histidine kinase.
  
 
 0.527
ALS22825.1
Diadenosine tetraphosphatase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.497
ALS22827.1
AraC family transcriptional regulator.
     
 0.455
ALS24198.1
Glutamate synthase.
     
 0.424
ALS23324.1
Two-component system sensor histidine kinase.
  
 
 0.419
ALS23799.1
Two-component system sensor histidine kinase.
  
 
 0.419
ALS24491.1
Histidine kinase; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase.
  
 
 0.419
ALS23538.1
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase.
  
 
 0.412
ALS25124.1
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase.
  
 
 0.412
Your Current Organism:
Paenibacillus naphthalenovorans
NCBI taxonomy Id: 162209
Other names: ATCC BAA-206, DSM 14203, P. naphthalenovorans, Paenibacillus naphthalenovorans Daane et al. 2002, Paenibacillus sp. PR-N1, Paenibacillus sp. PR-N16, Paenibacillus sp. PR-N5, Paenibacillus sp. PS-N1, Paenibacillus sp. PS-N6, Paenibacillus sp. SA-N1, strain PR-N1
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