Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALS23150.1Chemotaxis protein. (725 aa)    
Predicted Functional Partners:
ALS21655.1
Chemotaxis protein CheA.
 
 0.980
ALS22393.1
Chemotaxis protein CheA.
 
 0.980
ALS25102.1
Chemotaxis protein CheA.
 
 0.980
ALS22396.1
Signal transduction histidine kinase.
 
 0.979
cheD
Chemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
 0.978
ALS21656.1
Chemotaxis protein CheW.
 
 0.965
ALS22391.1
Purine-binding chemotaxis protein.
 
 0.965
ALS25101.1
Chemotaxis protein CheW.
 
 0.965
ALS25103.1
CheW-like domain-containing protein.
 
 0.965
ALS22398.1
Chemotaxis protein CheW.
 
 0.964
Your Current Organism:
Paenibacillus naphthalenovorans
NCBI taxonomy Id: 162209
Other names: ATCC BAA-206, DSM 14203, P. naphthalenovorans, Paenibacillus naphthalenovorans Daane et al. 2002, Paenibacillus sp. PR-N1, Paenibacillus sp. PR-N16, Paenibacillus sp. PR-N5, Paenibacillus sp. PS-N1, Paenibacillus sp. PS-N6, Paenibacillus sp. SA-N1, strain PR-N1
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