STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALS23906.1Fis family transcriptional regulator. (457 aa)    
Predicted Functional Partners:
ALS23907.1
Histidine kinase.
 
 
 
 0.910
ALS25280.1
PAS domain-containing two-component system sensor histidine kinase.
 
 
 0.832
ALS21644.1
Flagellar motor switch protein FliN.
  
  
 0.829
ALS23305.1
PAS domain-containing two-component system sensor histidine kinase.
 
 
 0.801
ALS25220.1
RNA polymerase sigma-54 factor.
 
  
 0.798
ALS23905.1
C4-dicarboxylate ABC transporter substrate-binding protein.
       0.718
ALS21653.1
Cobyrinic acid a,c-diamide synthase.
  
 
 0.664
ALS21643.1
Flagellar motor switch protein FliM.
  
  
 0.644
ALS21632.1
Flagellar motor switch protein FliG.
  
  
 0.635
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
  
  
 0.635
Your Current Organism:
Paenibacillus naphthalenovorans
NCBI taxonomy Id: 162209
Other names: ATCC BAA-206, DSM 14203, P. naphthalenovorans, Paenibacillus naphthalenovorans Daane et al. 2002, Paenibacillus sp. PR-N1, Paenibacillus sp. PR-N16, Paenibacillus sp. PR-N5, Paenibacillus sp. PS-N1, Paenibacillus sp. PS-N6, Paenibacillus sp. SA-N1, strain PR-N1
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