STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMC09950.1Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)    
Predicted Functional Partners:
AMC09948.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.840
AMC09949.1
Threonine aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
AMC10067.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.662
msrA
Hypothetical protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
    0.506
AMC10604.1
S1/P1 Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
AMC12000.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
AMC10114.1
Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.460
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.444
AMC09951.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.435
Your Current Organism:
Lutibacter profundi
NCBI taxonomy Id: 1622118
Other names: DSM 100437, JCM 30586, L. profundi, Lutibacter profundi Le Moine Bauer et al. 2016, Lutibacter sp. LP1, strain LP1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.