STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMC10097.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family. (615 aa)    
Predicted Functional Partners:
AMC11977.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.794
AMC10096.1
Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.789
AMC11974.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.763
AMC11975.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
AMC11981.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.711
AMC11973.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.707
AMC10323.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.617
AMC11177.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.617
AMC11190.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.617
AMC11983.1
Alpha-amlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
0.563
Your Current Organism:
Lutibacter profundi
NCBI taxonomy Id: 1622118
Other names: DSM 100437, JCM 30586, L. profundi, Lutibacter profundi Le Moine Bauer et al. 2016, Lutibacter sp. LP1, strain LP1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.