STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF21_08348Uncharacterized protein. (1054 aa)    
Predicted Functional Partners:
VF21_02876
CDC73_C domain-containing protein.
    
 0.755
VF21_08376
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.752
VF21_02286
Anaphase-promoting complex subunit 6.
    
 0.752
VF21_09054
DOC domain-containing protein.
    
 0.750
VF21_04329
Uncharacterized protein.
    
 0.750
VF21_07045
Uncharacterized protein.
    
 0.748
VF21_05391
Uncharacterized protein.
    
 0.747
VF21_09097
ANAPC5 domain-containing protein.
    
 0.741
VF21_08277
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.734
VF21_05118
FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]
    
  0.674
Your Current Organism:
Pseudogymnoascus sp. 05NY08
NCBI taxonomy Id: 1622149
Other names: P. sp. 05NY08
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