STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF21_06722Uncharacterized protein. (227 aa)    
Predicted Functional Partners:
VF21_01226
Trafficking protein particle complex subunit BET3.
   
 0.989
VF21_00946
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.988
VF21_04254
Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.
    
 0.987
VF21_07479
Uncharacterized protein.
   
 0.986
VF21_08501
Uncharacterized protein.
   
 0.986
VF21_07686
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.986
VF21_06101
Uncharacterized protein.
   
 0.986
VF21_06697
Uncharacterized protein.
   
 0.983
VF21_09979
Uncharacterized protein.
    
 0.980
VF21_00662
GTP-binding protein ypt1.
    
 0.977
Your Current Organism:
Pseudogymnoascus sp. 05NY08
NCBI taxonomy Id: 1622149
Other names: P. sp. 05NY08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.