VE04_03976 protein (Pseudogymnoascus sp. 24MN13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VE04_03976

Uncharacterized protein. (227 aa)

Predicted Functional Partners:

VE04_10060

0.639

VE04_08677

0.608

VE04_03663

0.589

VE04_06767

0.557

VE04_03172

0.531

VE04_03664

0.530

VE04_05856

0.519

VE04_05196

0.519

VE04_01027

0.519

VE04_06098

0.508

Your Current Organism:

Pseudogymnoascus sp. 24MN13

NCBI taxonomy Id: 1622150
Other names: P. sp. 24MN13

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VE04_01027	VE04_03663	A0A1B8DJB5	A0A1B8DCY6	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Electron transfer flavoprotein alpha subunit.	0.739
VE04_01027	VE04_03664	A0A1B8DJB5	A0A1B8DD74	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.452
VE04_01027	VE04_03976	A0A1B8DJB5	A0A1B8D6G7	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Uncharacterized protein.	0.519
VE04_01027	VE04_06098	A0A1B8DJB5	A0A1B8D6I7	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Fumarate hydratase, class II.	0.963
VE04_01027	VE04_06767	A0A1B8DJB5	A0A1B8D2X7	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Uncharacterized protein.	0.775
VE04_01027	VE04_10060	A0A1B8DJB5	A0A1B8CRL1	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Uncharacterized protein.	0.645
VE04_03172	VE04_03664	A0A1B8DDW9	A0A1B8DD74	Glutamine amidotransferase type-2 domain-containing protein.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.999
VE04_03172	VE04_03976	A0A1B8DDW9	A0A1B8D6G7	Glutamine amidotransferase type-2 domain-containing protein.	Uncharacterized protein.	0.531
VE04_03172	VE04_05196	A0A1B8DDW9	A0A1B8D7X3	Glutamine amidotransferase type-2 domain-containing protein.	Uncharacterized protein.	0.785
VE04_03172	VE04_05856	A0A1B8DDW9	A0A1B8D520	Glutamine amidotransferase type-2 domain-containing protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.785
VE04_03172	VE04_08677	A0A1B8DDW9	A0A1B8CX13	Glutamine amidotransferase type-2 domain-containing protein.	Thioredoxin reductase.	0.831
VE04_03663	VE04_01027	A0A1B8DCY6	A0A1B8DJB5	Electron transfer flavoprotein alpha subunit.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.739
VE04_03663	VE04_03664	A0A1B8DCY6	A0A1B8DD74	Electron transfer flavoprotein alpha subunit.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.775
VE04_03663	VE04_03976	A0A1B8DCY6	A0A1B8D6G7	Electron transfer flavoprotein alpha subunit.	Uncharacterized protein.	0.589
VE04_03663	VE04_06098	A0A1B8DCY6	A0A1B8D6I7	Electron transfer flavoprotein alpha subunit.	Fumarate hydratase, class II.	0.733
VE04_03663	VE04_08677	A0A1B8DCY6	A0A1B8CX13	Electron transfer flavoprotein alpha subunit.	Thioredoxin reductase.	0.476
VE04_03663	VE04_10060	A0A1B8DCY6	A0A1B8CRL1	Electron transfer flavoprotein alpha subunit.	Uncharacterized protein.	0.999
VE04_03664	VE04_01027	A0A1B8DD74	A0A1B8DJB5	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.452
VE04_03664	VE04_03172	A0A1B8DD74	A0A1B8DDW9	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Glutamine amidotransferase type-2 domain-containing protein.	0.999
VE04_03664	VE04_03663	A0A1B8DD74	A0A1B8DCY6	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Electron transfer flavoprotein alpha subunit.	0.775