KMN81882.1 protein (Chromobacterium sp. LK11)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KMN81882.1

CRISPR-associated protein Csy2; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)

Predicted Functional Partners:

KMN81883.1

0.969

KMN81881.1

0.962

KMN81880.1

0.961

KMN81887.1

0.901

KMN81886.1

0.827

Your Current Organism:

Chromobacterium sp. LK11

NCBI taxonomy Id: 1628212
Other names: C. sp. LK11

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMN81880.1	KMN81881.1	VK98_12290	VK98_12295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
KMN81880.1	KMN81882.1	VK98_12290	VK98_12300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Csy2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
KMN81880.1	KMN81883.1	VK98_12290	VK98_12305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
KMN81880.1	KMN81886.1	VK98_12290	VK98_12320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
KMN81880.1	KMN81887.1	VK98_12290	VK98_12325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
KMN81881.1	KMN81880.1	VK98_12295	VK98_12290	CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
KMN81881.1	KMN81882.1	VK98_12295	VK98_12300	CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Csy2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
KMN81881.1	KMN81883.1	VK98_12295	VK98_12305	CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KMN81881.1	KMN81886.1	VK98_12295	VK98_12320	CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KMN81881.1	KMN81887.1	VK98_12295	VK98_12325	CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
KMN81882.1	KMN81880.1	VK98_12300	VK98_12290	CRISPR-associated protein Csy2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
KMN81882.1	KMN81881.1	VK98_12300	VK98_12295	CRISPR-associated protein Csy2; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
KMN81882.1	KMN81883.1	VK98_12300	VK98_12305	CRISPR-associated protein Csy2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
KMN81882.1	KMN81886.1	VK98_12300	VK98_12320	CRISPR-associated protein Csy2; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
KMN81882.1	KMN81887.1	VK98_12300	VK98_12325	CRISPR-associated protein Csy2; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
KMN81883.1	KMN81880.1	VK98_12305	VK98_12290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
KMN81883.1	KMN81881.1	VK98_12305	VK98_12295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KMN81883.1	KMN81882.1	VK98_12305	VK98_12300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Csy2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
KMN81883.1	KMN81886.1	VK98_12305	VK98_12320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
KMN81883.1	KMN81887.1	VK98_12305	VK98_12325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900