KJH78800.1 protein (Pseudomonas sp. ES333) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KJH78800.1

Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)

Predicted Functional Partners:

KJH78798.1

0.998

KJH78799.1

0.998

KJH77519.1

0.964

KJH73895.1

0.964

KJH77544.1

0.949

KJH76718.1

0.937

KJH78962.1

0.918

KJH77651.1

0.917

KJH74512.1

0.917

KJH78801.1

0.888

Your Current Organism:

Pseudomonas sp. ES333

NCBI taxonomy Id: 1628833
Other names: P. sp. ES3-33, Pseudomonas sp. ES3-33

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KJH73895.1	KJH74512.1	UB23_26970	UB23_24190	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
KJH73895.1	KJH76718.1	UB23_26970	UB23_11935	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
KJH73895.1	KJH77544.1	UB23_26970	UB23_08470	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
KJH73895.1	KJH77651.1	UB23_26970	UB23_07710	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
KJH73895.1	KJH78800.1	UB23_26970	UB23_01635	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
KJH73895.1	KJH78962.1	UB23_26970	UB23_01235	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor protein evgS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
KJH74512.1	KJH73895.1	UB23_24190	UB23_26970	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
KJH74512.1	KJH76718.1	UB23_24190	UB23_11935	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJH74512.1	KJH77519.1	UB23_24190	UB23_08465	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
KJH74512.1	KJH77544.1	UB23_24190	UB23_08470	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KJH74512.1	KJH77651.1	UB23_24190	UB23_07710	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJH74512.1	KJH78798.1	UB23_24190	UB23_01625	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyvinylalcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
KJH74512.1	KJH78799.1	UB23_24190	UB23_01630	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
KJH74512.1	KJH78800.1	UB23_24190	UB23_01635	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KJH74512.1	KJH78801.1	UB23_24190	UB23_01645	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
KJH74512.1	KJH78962.1	UB23_24190	UB23_01235	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor protein evgS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJH76718.1	KJH73895.1	UB23_11935	UB23_26970	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
KJH76718.1	KJH74512.1	UB23_11935	UB23_24190	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJH76718.1	KJH77519.1	UB23_11935	UB23_08465	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
KJH76718.1	KJH77544.1	UB23_11935	UB23_08470	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999