Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRN46711.1 | exoA | IV50_GL000996 | IV50_GL000634 | Hypothetical protein. | Exodeoxyribonuclease iii. | 0.595 |
KRN46711.1 | topA_1 | IV50_GL000996 | IV50_GL000028 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.521 |
birA | exoA | IV50_GL001275 | IV50_GL000634 | biotin--[acetyl-CoA-carboxylase] ligase and biotin operon repressor. | Exodeoxyribonuclease iii. | 0.898 |
birA | metG_2 | IV50_GL001275 | IV50_GL001496 | biotin--[acetyl-CoA-carboxylase] ligase and biotin operon repressor. | methionyl-tRNA synthetase. | 0.663 |
birA | mutY | IV50_GL001275 | IV50_GL000601 | biotin--[acetyl-CoA-carboxylase] ligase and biotin operon repressor. | A G-specific adenine glycosylase. | 0.541 |
birA | tadA | IV50_GL001275 | IV50_GL000692 | biotin--[acetyl-CoA-carboxylase] ligase and biotin operon repressor. | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.940 |
dnaN_1 | exoA | IV50_GL000532 | IV50_GL000634 | DNA-directed DNA polymerase III, beta chain. | Exodeoxyribonuclease iii. | 0.912 |
dnaN_1 | metG_2 | IV50_GL000532 | IV50_GL001496 | DNA-directed DNA polymerase III, beta chain. | methionyl-tRNA synthetase. | 0.434 |
dnaN_1 | mutY | IV50_GL000532 | IV50_GL000601 | DNA-directed DNA polymerase III, beta chain. | A G-specific adenine glycosylase. | 0.716 |
dnaN_1 | polA_3 | IV50_GL000532 | IV50_GL000073 | DNA-directed DNA polymerase III, beta chain. | DNA polymerase I. | 0.999 |
dnaN_1 | topA_1 | IV50_GL000532 | IV50_GL000028 | DNA-directed DNA polymerase III, beta chain. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.735 |
dnaN_1 | ung | IV50_GL000532 | IV50_GL001384 | DNA-directed DNA polymerase III, beta chain. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.785 |
exoA | KRN46711.1 | IV50_GL000634 | IV50_GL000996 | Exodeoxyribonuclease iii. | Hypothetical protein. | 0.595 |
exoA | birA | IV50_GL000634 | IV50_GL001275 | Exodeoxyribonuclease iii. | biotin--[acetyl-CoA-carboxylase] ligase and biotin operon repressor. | 0.898 |
exoA | dnaN_1 | IV50_GL000634 | IV50_GL000532 | Exodeoxyribonuclease iii. | DNA-directed DNA polymerase III, beta chain. | 0.912 |
exoA | metG_2 | IV50_GL000634 | IV50_GL001496 | Exodeoxyribonuclease iii. | methionyl-tRNA synthetase. | 0.554 |
exoA | mutY | IV50_GL000634 | IV50_GL000601 | Exodeoxyribonuclease iii. | A G-specific adenine glycosylase. | 0.886 |
exoA | polA_3 | IV50_GL000634 | IV50_GL000073 | Exodeoxyribonuclease iii. | DNA polymerase I. | 0.948 |
exoA | rsuA | IV50_GL000634 | IV50_GL000335 | Exodeoxyribonuclease iii. | Pseudouridylate synthase. | 0.859 |
exoA | tadA | IV50_GL000634 | IV50_GL000692 | Exodeoxyribonuclease iii. | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.585 |
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