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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN46055.1Rod shape-determining protein MreC. (283 aa)    
Predicted Functional Partners:
mreB_5
Rod shape-determining protein MreB.
 
 
 0.976
KRN46060.1
Rod shape-determining protein MreD.
  
 
 0.957
mreB_2
Rod shape-determining protein MreB.
 
 
 0.948
penA_2
Penicillin-binding protein.
 
 
 0.904
pbpX
Penicillin-binding protein 2B.
 
 
 0.838
KRN46053.1
DNA repair protein RadC.
  
  
 0.822
rodA_2
Cell division membrane protein; Belongs to the SEDS family.
 
  
 0.706
KRN47124.1
Xre-like DNA-binding protein.
 
 
 
 0.662
KRN46875.1
Cell division initiation protein diviva.
  
 
 0.651
divIVA
Cell division initiation protein.
  
 
 0.593
Your Current Organism:
Weissella viridescens
NCBI taxonomy Id: 1629
Other names: ATCC 12706, BCRC 11650, CCM 56, CCRC 11650, CCRC:11650, CCUG 21533, CCUG 30502, CECT 283, CIP 102810, DSM 20410, IAM 13546, LMG 3507, LMG:3507, Lactobacillus viridescens, NCCB 71015, NCIB 8965, NCIMB 8965, NCTC 13645, NCTC 13770, W. viridescens
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