Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRN46075.1 | mraZ | IV50_GL001048 | IV50_GL001046 | Hypothetical protein. | Cell division protein MraZ; Belongs to the MraZ family. | 0.643 |
KRN46075.1 | pbpX | IV50_GL001048 | IV50_GL001049 | Hypothetical protein. | Penicillin-binding protein 2B. | 0.913 |
KRN46075.1 | rsmH | IV50_GL001048 | IV50_GL001047 | Hypothetical protein. | 16S rRNA methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.908 |
mraZ | KRN46075.1 | IV50_GL001046 | IV50_GL001048 | Cell division protein MraZ; Belongs to the MraZ family. | Hypothetical protein. | 0.643 |
mraZ | pbpX | IV50_GL001046 | IV50_GL001049 | Cell division protein MraZ; Belongs to the MraZ family. | Penicillin-binding protein 2B. | 0.602 |
mraZ | rsmH | IV50_GL001046 | IV50_GL001047 | Cell division protein MraZ; Belongs to the MraZ family. | 16S rRNA methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.993 |
pbpX | KRN46075.1 | IV50_GL001049 | IV50_GL001048 | Penicillin-binding protein 2B. | Hypothetical protein. | 0.913 |
pbpX | mraZ | IV50_GL001049 | IV50_GL001046 | Penicillin-binding protein 2B. | Cell division protein MraZ; Belongs to the MraZ family. | 0.602 |
pbpX | rsmH | IV50_GL001049 | IV50_GL001047 | Penicillin-binding protein 2B. | 16S rRNA methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.785 |
rpsB | rpsI | IV50_GL000358 | IV50_GL000762 | rpsB protein; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rpsB | rpsJ | IV50_GL000358 | IV50_GL000709 | rpsB protein; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rpsB | rpsL | IV50_GL000358 | IV50_GL001409 | rpsB protein; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
rpsB | rpsO_1 | IV50_GL000358 | IV50_GL001512 | rpsB protein; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
rpsB | rpsP | IV50_GL000358 | IV50_GL001092 | rpsB protein; Belongs to the universal ribosomal protein uS2 family. | rpsP protein; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
rpsB | rsmH | IV50_GL000358 | IV50_GL001047 | rpsB protein; Belongs to the universal ribosomal protein uS2 family. | 16S rRNA methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.774 |
rpsI | rpsB | IV50_GL000762 | IV50_GL000358 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | rpsB protein; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rpsI | rpsJ | IV50_GL000762 | IV50_GL000709 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rpsI | rpsL | IV50_GL000762 | IV50_GL001409 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
rpsI | rpsO_1 | IV50_GL000762 | IV50_GL001512 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
rpsI | rpsP | IV50_GL000762 | IV50_GL001092 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | rpsP protein; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
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