Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pbpXPenicillin-binding protein 2B. (728 aa)    
Predicted Functional Partners:
penA_2
Penicillin-binding protein.
  
  
 0.979
ftsW_1
Cell division protein FtsW; Belongs to the SEDS family.
 
 
 0.977
ponA_1
Membrane carboxypeptidase (penicillin-binding protein).
 
 
 0.977
KRN46080.1
Cell division septal protein.
 
 
 0.970
pbpD
Membrane carboxypeptidase (penicillin-binding protein).
 
 
0.963
rodA_2
Cell division membrane protein; Belongs to the SEDS family.
 
 
 0.963
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase.
 
  
 0.962
KRN46075.1
Hypothetical protein.
  
 
 0.928
murD
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
  
 0.907
KRN46055.1
Rod shape-determining protein MreC.
 
 
 0.887
Your Current Organism:
Weissella viridescens
NCBI taxonomy Id: 1629
Other names: ATCC 12706, BCRC 11650, CCM 56, CCRC 11650, CCRC:11650, CCUG 21533, CCUG 30502, CECT 283, CIP 102810, DSM 20410, IAM 13546, LMG 3507, LMG:3507, Lactobacillus viridescens, NCCB 71015, NCIB 8965, NCIMB 8965, NCTC 13645, NCTC 13770, W. viridescens
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